Claude de Pamphilis All publications ( 18 ) Wall PK. Leebens-Mack J. Müller KF. Field D. Altman NS. dePamphilis CW. PlantTribes: a gene and gene family resource for comparative genomics in plants. 2008 Jan. Nucleic Acids Res. 36(Database issue):D970-6. Hu W. dePamphilis CW. Ma H. Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families. 2008 Aug. J Integr Plant Biol. 50(8):1031-45. Barakat A. Wall K. Leebens-Mack J. Wang YJ. Carlson JE. Depamphilis CW. Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. 2007 Jul 17. Plant J. . Wickett NJ. Zhang Y. Hansen SK. Roper JM. Kuehl JV. Plock SA. Wolf PG. Depamphilis CW. Boore JL. Goffinet B. Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis. 2007 Dec 1. Mol Biol Evol. . Carlson JE. Leebens-Mack JH. Wall PK. Zahn LM. Mueller LA. Landherr LL. Hu Y. Ilut DC. Arrington JM. Choirean S. Becker A. Field D. Tanksley SD. Ma H. dePamphilis CW. EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot. 2006 Oct. Plant Mol Biol. 62(3):351-69. Cui L. Wall PK. Leebens-Mack JH. Lindsay BG. Soltis DE. Doyle JJ. Soltis PS. Carlson JE. Arumuganathan K. Barakat A. Albert VA. Ma H. dePamphilis CW. Widespread genome duplications throughout the history of flowering plants. 2006 Jun. Genome Res. 16(6):738-49. McNeal JR. Leebens-Mack JH. Arumuganathan K. Kuehl JV. Boore JL. DePamphilis CW. Using partial genomic fosmid libraries for sequencing complete organellar genomes. 2006 Jul. Biotechniques. 41(1):69-73. Zahn LM. Leebens-Mack JH. Arrington JM. Hu Y. Landherr LL. dePamphilis CW. Becker A. Theissen G. Ma H. Conservation and divergence in the AGAMOUS subfamily of MADS-box genes: evidence of independent sub- and neofunctionalization events. 2006 Jan-Feb. Evol Dev. 8(1):30-45. Cui L. Veeraraghavan N. Richter A. Wall K. Jansen RK. Leebens-Mack J. Makalowska I. dePamphilis CW. ChloroplastDB: the Chloroplast Genome Database. 2006 Jan 1. Nucleic Acids Res. 34(Database issue):D692-6. Duarte JM. Cui L. Wall PK. Zhang Q. Zhang X. Leebens-Mack J. Ma H. Altman N. dePamphilis CW. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. 2006 Feb. Mol Biol Evol. 23(2):469-78. Cui L. Leebens-Mack J. Wang LS. Tang J. Rymarquis L. Stern DB. dePamphilis CW. Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach. 2006. BMC Evol Biol. 6:13. Leebens-Mack J. Raubeson LA. Cui L. Kuehl JV. Fourcade MH. Chumley TW. Boore JL. Jansen RK. depamphilis CW. Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone. 2005 Oct. Mol Biol Evol. 22(10):1948-63. Zahn LM. Leebens-Mack J. Depamphilis CW. Ma H. Theissen G. To B or Not to B a Flower: The Role of DEFICIENS and GLOBOSA Orthologs in the Evolution of the Angiosperms. 2005 Feb 4. J Hered.. Zahn LM. Kong H. Leebens-Mack JH. Kim S. Soltis PS. Landherr LL. Soltis DE. Depamphilis CW. Ma H. The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history. 2005 Apr. Genetics. 169(4):2209-23. Wang G. Kong H. Sun Y. Zhang X. Zhang W. Altman N. DePamphilis CW. Ma H. Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins. 2004 Jun. Plant Physiol. 135(2):1084-99. National Institute of General Medical Sciences Nam J. dePamphilis CW. Ma H. Nei M. Antiquity and evolution of the MADS-box gene family controlling flower development in plants. 2003 Sep. Mol Biol Evol. 20(9):1435-47. Olmstead RG. dePamphilis CW. Wolfe AD. Young ND. Elisons WJ. Reeves PA. Disintegration of the Scrophulariaceae. 2001 Feb. Am J Bot. 88(2):348-361. Barkman TJ. Chenery G. McNeal JR. Lyons-Weiler J. Ellisens WJ. Moore G. Wolfe AD. dePamphilis CW. Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny. 2000 Nov 21. Proc Natl Acad Sci U S A. 97(24):13166-71.